A system for information management in BioMedical studies - SIMBioMS

Maria Krestyaninova; Andris Zarins; Juris Viksna; Natalja Kurbatova; Peteris Rucevskis; Sudeshna Guha Neogi; Mike Gostev; Teemu Perheentupa; Juha Knuuttila; Amy Barrett; Ilkka Lappalainen; Johan Rung; Karlis Podnieks; Ugis Sarkans; Mark I. McCarthy; Alvis Brazma

doi:10.1093/bioinformatics/btp420

A system for information management in BioMedical studies - SIMBioMS

Maria Krestyaninova^*
, Andris Zarins
, Juris Viksna
, Natalja Kurbatova
, Peteris Rucevskis
, Sudeshna Guha Neogi
, Mike Gostev
, Teemu Perheentupa
, Juha Knuuttila
, Amy Barrett
, Ilkka Lappalainen
, Johan Rung
, Karlis Podnieks
, Ugis Sarkans
, Mark I. McCarthy
, Alvis Brazma

^*Corresponding author for this work

European Molecular Biology Laboratory
University of Latvia
University of Cambridge
Institute for Molecular Medicine Finland FIMM
Oxford University Hospitals NHS Foundation Trust
University of Oxford

Research output: Contribution to journal › Article › peer-review

26 Citations (Scopus)

Abstract

SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.

Original language	English
Pages (from-to)	2768-2769
Number of pages	2
Journal	Bioinformatics
Volume	25
Issue number	20
DOIs	https://doi.org/10.1093/bioinformatics/btp420
Publication status	Published - 2009
Externally published	Yes

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10.1093/bioinformatics/btp420

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Krestyaninova, M., Zarins, A., Viksna, J., Kurbatova, N., Rucevskis, P., Neogi, S. G., Gostev, M., Perheentupa, T., Knuuttila, J., Barrett, A., Lappalainen, I., Rung, J., Podnieks, K., Sarkans, U., McCarthy, M. I., & Brazma, A. (2009). A system for information management in BioMedical studies - SIMBioMS. Bioinformatics, 25(20), 2768-2769. https://doi.org/10.1093/bioinformatics/btp420

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title = "A system for information management in BioMedical studies - SIMBioMS",

abstract = "SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.",

author = "Maria Krestyaninova and Andris Zarins and Juris Viksna and Natalja Kurbatova and Peteris Rucevskis and Neogi, \{Sudeshna Guha\} and Mike Gostev and Teemu Perheentupa and Juha Knuuttila and Amy Barrett and Ilkka Lappalainen and Johan Rung and Karlis Podnieks and Ugis Sarkans and McCarthy, \{Mark I.\} and Alvis Brazma",

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doi = "10.1093/bioinformatics/btp420",

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volume = "25",

pages = "2768--2769",

journal = "Bioinformatics",

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Krestyaninova, M, Zarins, A, Viksna, J, Kurbatova, N, Rucevskis, P, Neogi, SG, Gostev, M, Perheentupa, T, Knuuttila, J, Barrett, A, Lappalainen, I, Rung, J, Podnieks, K, Sarkans, U, McCarthy, MI & Brazma, A 2009, 'A system for information management in BioMedical studies - SIMBioMS', Bioinformatics, vol. 25, no. 20, pp. 2768-2769. https://doi.org/10.1093/bioinformatics/btp420

TY - JOUR

T1 - A system for information management in BioMedical studies - SIMBioMS

AU - Krestyaninova, Maria

AU - Zarins, Andris

AU - Viksna, Juris

AU - Kurbatova, Natalja

AU - Rucevskis, Peteris

AU - Neogi, Sudeshna Guha

AU - Gostev, Mike

AU - Perheentupa, Teemu

AU - Knuuttila, Juha

AU - Barrett, Amy

AU - Lappalainen, Ilkka

AU - Rung, Johan

AU - Podnieks, Karlis

AU - Sarkans, Ugis

AU - McCarthy, Mark I.

AU - Brazma, Alvis

PY - 2009

Y1 - 2009

N2 - SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.

AB - SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented.

UR - https://www.scopus.com/pages/publications/70349983268

U2 - 10.1093/bioinformatics/btp420

DO - 10.1093/bioinformatics/btp420

M3 - Article

C2 - 19633095

AN - SCOPUS:70349983268

SN - 1367-4803

VL - 25

SP - 2768

EP - 2769

JO - Bioinformatics

JF - Bioinformatics

IS - 20

ER -

A system for information management in BioMedical studies - SIMBioMS

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