Abstract
The size and number of available genome scale metabolic models and reconstructions is growing rapidly. Various computational methods and tools are developed in the last decades for metabolic network construction, analysis and optimization. A software tool SpaceAnalyzer (SAnalyzer) is developed in Matlab environment for automatic generation of biochemical pathways to new metabolites. The computational experiments were performed to build automatically the connectivity tree for 2,3-Butanediol, n-Butanol, caprolactam, lactose, penicillin and cellulose as substrates. The software tool is freely available online at: http://www.biosystems.lv/sanalyzer.
| Original language | English |
|---|---|
| Pages (from-to) | 435-440 |
| Number of pages | 6 |
| Journal | Engineering for Rural Development |
| Publication status | Published - 2013 |
| Externally published | Yes |
| Event | 12th International Scientific Conference on Engineering for Rural Development 2013 - Jelgava, Latvia Duration: 23 May 2013 → 24 May 2013 |
OECD Field of Science
- 1.4 Chemical Sciences
- 1.6 Biological Sciences
Keywords
- Metabolic pathway construction
- Metabolism
- Solution space
- Synthetic biology
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