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Minimum information about a biofilm experiment (MIABiE): Standards for reporting experiments and data on sessile microbial communities living at interfaces

  • Anália Lourenço
  • , Tom Coenye
  • , Darla M. Goeres
  • , Gianfranco Donelli
  • , Andreia S. Azevedo
  • , Howard Ceri
  • , Filipa L. Coelho
  • , Hans Curt Flemming
  • , Talis Juhna
  • , Susana P. Lopes
  • , Rosário Oliveira
  • , Antonio Oliver
  • , Mark E. Shirtliff
  • , Ana M. Sousa
  • , Paul Stoodley
  • , Maria Olivia Pereira
  • , Nuno F. Azevedo*
  • *Corresponding author for this work
  • University of Vigo
  • University of Minho
  • Ghent University
  • Montana State University
  • IRCCS Fondazione Santa Lucia - Roma
  • University of Porto
  • University of Calgary
  • University of Duisburg-Essen
  • Riga Technical University
  • Hospital Universitario Son Espases
  • University of Maryland, Baltimore
  • Ohio State University

Research output: Contribution to journalShort surveypeer-review

49 Citations (Scopus)

Abstract

The minimum information about a biofilm experiment (MIABiE) initiative has arisen from the need to find an adequate and scientifically sound way to control the quality of the documentation accompanying the public deposition of biofilm-related data, particularly those obtained using high-throughput devices and techniques. Thereby, the MIABiE consortium has initiated the identification and organization of a set of modules containing the minimum information that needs to be reported to guarantee the interpretability and independent verification of experimental results and their integration with knowledge coming from other fields. MIABiE does not intend to propose specific standards on how biofilms experiments should be performed, because it is acknowledged that specific research questions require specific conditions which may deviate from any standardization. Instead, MIABiE presents guidelines about the data to be recorded and published in order for the procedure and results to be easily and unequivocally interpreted and reproduced. Overall, MIABiE opens up the discussion about a number of particular areas of interest and attempts to achieve a broad consensus about which biofilm data and metadata should be reported in scientific journals in a systematic, rigorous and understandable manner.

Original languageEnglish
Pages (from-to)250-256
Number of pages7
JournalFEMS Immunology and Medical Microbiology
Volume70
Issue number3
DOIs
Publication statusPublished - 2014

Keywords

  • Biofilm
  • Data interchange
  • Data standardization
  • Microbial communities
  • machinereadable formats

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