Single-feature polymorphism discovery in the barley transcriptome.

Nils Rostoks; Justin O. Borevitz; Peter E. Hedley; Joanne Russell; Sharon Mudie; Jenny Morris; Linda Cardle; David F. Marshall; Robbie Waugh

Single-feature polymorphism discovery in the barley transcriptome.

Nils Rostoks^*
, Justin O. Borevitz
, Peter E. Hedley
, Joanne Russell
, Sharon Mudie
, Jenny Morris
, Linda Cardle
, David F. Marshall
, Robbie Waugh

^*Corresponding author for this work

The James Hutton Institute

Research output: Contribution to journal › Article › peer-review

136 Citations (Scopus)

Abstract

A probe-level model for analysis of GeneChip gene-expression data is presented which identified more than 10,000 single-feature polymorphisms (SFP) between two barley genotypes. The method has good sensitivity, as 67% of known single-nucleotide polymorphisms (SNP) were called as SFPs. This method is applicable to all oligonucleotide microarray data, accounts for SNP effects in gene-expression data and represents an efficient and versatile approach for highly parallel marker identification in large genomes.

Original language	English
Pages (from-to)	R54
Journal	Genome Biology
Volume	6
Issue number	6
Publication status	Published - 2005
Externally published	Yes

Cite this

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title = "Single-feature polymorphism discovery in the barley transcriptome.",

abstract = "A probe-level model for analysis of GeneChip gene-expression data is presented which identified more than 10,000 single-feature polymorphisms (SFP) between two barley genotypes. The method has good sensitivity, as 67\% of known single-nucleotide polymorphisms (SNP) were called as SFPs. This method is applicable to all oligonucleotide microarray data, accounts for SNP effects in gene-expression data and represents an efficient and versatile approach for highly parallel marker identification in large genomes.",

author = "Nils Rostoks and Borevitz, \{Justin O.\} and Hedley, \{Peter E.\} and Joanne Russell and Sharon Mudie and Jenny Morris and Linda Cardle and Marshall, \{David F.\} and Robbie Waugh",

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AU - Rostoks, Nils

AU - Borevitz, Justin O.

AU - Hedley, Peter E.

AU - Russell, Joanne

AU - Mudie, Sharon

AU - Morris, Jenny

AU - Cardle, Linda

AU - Marshall, David F.

AU - Waugh, Robbie

PY - 2005

Y1 - 2005

N2 - A probe-level model for analysis of GeneChip gene-expression data is presented which identified more than 10,000 single-feature polymorphisms (SFP) between two barley genotypes. The method has good sensitivity, as 67% of known single-nucleotide polymorphisms (SNP) were called as SFPs. This method is applicable to all oligonucleotide microarray data, accounts for SNP effects in gene-expression data and represents an efficient and versatile approach for highly parallel marker identification in large genomes.

AB - A probe-level model for analysis of GeneChip gene-expression data is presented which identified more than 10,000 single-feature polymorphisms (SFP) between two barley genotypes. The method has good sensitivity, as 67% of known single-nucleotide polymorphisms (SNP) were called as SFPs. This method is applicable to all oligonucleotide microarray data, accounts for SNP effects in gene-expression data and represents an efficient and versatile approach for highly parallel marker identification in large genomes.

UR - https://www.scopus.com/pages/publications/27544488921

M3 - Article

C2 - 15960806

AN - SCOPUS:27544488921

SN - 1474-7596

VL - 6

SP - R54

JO - Genome Biology

JF - Genome Biology

IS - 6

ER -

Single-feature polymorphism discovery in the barley transcriptome.

Abstract

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